浩瀚宇宙 灿烂星空

工作和生活中的七七八八

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使用iperf测试网络性能

Iperf是美国伊利诺斯大学（University of Illinois）开发的一种开源的网络性能测试工具。
可以用来测试网络节点间（也包括回环）TCP或UDP连接的性能，包括带宽、抖动以及丢包率，
其中抖动和丢包率适应于UDP测试，而带宽测试适应于TCP和UDP。

TCP支持：

  • Measure bandwidth
  • Report MSS/MTU size and observed read sizes.
  • Support for TCP window size via socket buffers.
  • Multi-threaded if pthreads or Win32 threads are available. Client and server can have multiple simultaneous connections.

UDP支持：

  • Client can create UDP streams of specified bandwidth.
  • Measure packet loss
  • Measure delay jitter
  • Multicast capable
  • Multi-threaded if pthreads are available. Client and server can have multiple simultaneous connections.

所以，服务端通过-u来区分监听协议，而TCP协议不能计算时延与丢包率，而且不能指定发送带宽。

服务端

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$ iperf3 -s

客户端

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$ iperf3 -c IP
$ iperf3 --client IP --bandwidth 900M --window 1M

需要使用TCP来测试带宽的时候，需要指定TCP的窗口大小，

窗口的大小即网络通道的容量 capacity = bandwidth x round-trip-time

其中round-trip-time可以通过ping来得到。

参数

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-c --client 标记客户端
-i --interval 设定输出值间隔
-u --udp 使用传输协议为UDP
-t --time 设定传输时间
-F --file 指定传输文件
-P --parallel 指定进程数
-b --bandwidth 指定带宽
-w --window 指定window大小,For TCP, this sets the TCP window size;For UDP it is just the buffer which data

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Django 忘记管理员或忘记管理员密码

第一步：运行django shell

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python3 manage.py shell

第二步：重设密码

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>>> from django.contrib.auth.models import User
>>> user = User.object.get(username='your_account')
>>> user.set_password('your_new_password')
>>> user.save()
>>> quit()

如果你连管理员用户名都忘了。。。

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>>> from django.contrib.auth.models import User
>>> user = User.object.get(pk=1)
>>> user
<User: you_account>
>>> user.set_password('your_new_password')
>>> user.save()
>>> quit()

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git chekcout

请务必记得 git checkout -- <file> 是一个危险的命令。 你对那个文件在本地的任何修改都会消失——Git 会用最近提交的版本覆盖掉它。 除非你确实清楚不想要对那个文件的本地修改了，否则请不要使用这个命令。

分支切换

要切换到一个已存在的分支，你需要使用 git checkout 命令。 我们现在切换到新创建的 testing 分支去：

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$ git checkout testing

这样 HEAD 就指向 testing 分支了。

检出特定的标签tag

如果你想查看某个标签所指向的文件版本，可以使用 git checkout 命令， 虽然这会使你的仓库处于“分离头指针（detached HEAD）”的状态——这个状态有些不好的副作用：

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$ git checkout 2.0.0
Note: checking out '2.0.0'.

You are in 'detached HEAD' state. You can look around, make experimental
changes and commit them, and you can discard any commits you make in this
state without impacting any branches by performing another checkout.

If you want to create a new branch to retain commits you create, you may
do so (now or later) by using -b with the checkout command again. Example:

  git checkout -b <new-branch>

HEAD is now at 99ada87... Merge pull request #89 from schacon/appendix-final

$ git checkout 2.0-beta-0.1
Previous HEAD position was 99ada87... Merge pull request #89 from schacon/appendix-final
HEAD is now at df3f601... add atlas.json and cover image

在“分离头指针”状态下，如果你做了某些更改然后提交它们，标签不会发生变化， 但你的新提交将不属于任何分支，并且将无法访问，除非通过确切的提交哈希才能访问。 因此，如果你需要进行更改，比如你要修复旧版本中的错误，那么通常需要创建一个新分支：

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$ git checkout -b version2 v2.0.0
Switched to a new branch 'version2'

如果在这之后又进行了一次提交，version2 分支就会因为这个改动向前移动， 此时它就会和 v2.0.0 标签稍微有些不同，这时就要当心了。

建立本地分支并将远程分支拉取至本地

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$ git checkout -b 本地分支名 origin/远程分支名

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Git 中文

git在显示的过程中，中文可能会乱码，解决方法如下

git status 乱码

解决方法：
git config --global core.quotepath false

git commit 乱码

解决方法：
git config --global i18n.commitencoding utf-8

git status 乱码

解决方法：
git config --global i18n.logoutputencoding utf-8

注意：如果是Linux系统，需要设置环境变量 export LESSCHARSET=utf-8

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CODE contribution policy

Everybody is encouraged to help improve the quality of the code.
You can help by reporting issues or even better fix issues yourself.

If you have a patch for CODE we use the github pull request system.

Also to keep the CODE code quality high we have written down some guidelines for contributing, see below.

General considerations

If you have problems or questions with/about git or github, first check [1].
If you modify any code, make sure the test suite still runs (make test). If it fails, fix the code or the relevant test.
If you change a function/method signature, update the doxygen documentation accordingly.
If you add a function or method, add a test for it add it to the doxygen documentation.
The tested code coverage line count should increase, not decrease.
Follow the google style code as much as possible [2].

Contribution procedure

Create a github account, setup SSH keys.
Fork the CODE repository on github [3].
Create a branch and commit your changes to this branch.
Push your branch to your github fork (not the original CODE, you probably don’t have permission).
Issue a pull request [4].
When the pull request is reviewed and there are no problems it will be accepted. Merging a pull request should always happen by someone else.
It can happen there are some mistakes here and there, we use the github commenting system to discuss these issues.
If there is a problem with the commit, you need to fix it. You can commit to the same branch, the PR will be updated automatically.

General notes about Pull requests

Please create descriptive commits containing atomic changes. Use short commit messages (try 50 characters, max is 70 characters); longer commit messages are possible in the body of the commit message (separated from the subject by an empty line). See [5].
If you fix an existing github issue, reference it in the commit message body, e.g. ‘Fixes #41’.
If your Pull request does not refer to an existing github issue, it is not necessary to create one (because github will present the PR just like an issue).
You can rewrite the history of the commits in your branch using rebase, but don’t rewrite the history before the first commit of your new branch.
We like to keep the history clean, and prevent a lot of ‘fix typo’ messages.
If you rewrite your history of your branch you can force push those changes to your branch. The PR will be updated. See e.g. [6].

[1] http://help.github.com
[2] https://google-styleguide.googlecode.com/svn/trunk/cppguide.html
[3] https://help.github.com/articles/fork-a-repo/
[4] https://help.github.com/articles/creating-a-pull-request/
[5] https://chris.beams.io/posts/git-commit
[6] https://developer.atlassian.com/blog/2015/04/force-with-lease/

Refer

https://github.com/casacore/casacore/blob/master/CONTRIBUTING.md

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CASA

CASA : The Common Astronomy Software Applications packages

  • Single Dish
  • ALMA and VLA
  • CASA VLBI

Download

  • CASA 6.1 -python3
  • CASA 5.7 -python2.7

Data Format

MS : the standard CASA data format

Starting CASA

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casa

The output from CASA commands is sent to the file casa-YYYYMMDD-HHMMSS.log.

CASA tasks

Just like tget listobs in aips

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CASA <1> : default ('listobs')
CASA <2> : inp

CASA tasks : Python scripts

Standard input

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listobs (vis='EXMPL.ms', listfile='EXMPL.listfile')

Outside CASA, using casa -c yourfile.py.

CASA PlotMS

PlotMS

  • can diplay X-Y plots of visibility data and calibration tables
  • can be started inside a CASA shell or as a stand-alone executable

CASA Viewer

Can display both images and MS file

CASA vs AIPS

CASA calibration tables

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Plot tools in CASA

Why ploting

What should we look at ?

  • Actual (visibility) data or calibration solutions
  • Antenna- or baseline-based data
  • Multi-dimensional data : baselines,source,times,frequenciese(subbands,channels),polarizations,…

plotms

Inside the CASA

Outside the CASA

viewer

Inside CASA

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viewer(vis='n14c3.ms')

Outside 

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casaviewer vis="n14c3.ms"

plotcal

Only in CASA 5.7-

Other tools …

  • jplotter
  • AOFlagger
  • CARTA : possible future replacement for DS9,kvis(casaviewer)

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如何安装DiFX – how to install DiFX on CentOS

如果只是使用，那么可以使用下面一个命令来获取DiFX的运行环境(需要安装docker)：

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$ docker run -it shaoguangleo/centos-difx

如果希望运行图形界面，运行下述命令：

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$ docker run -it -e DISPLAY=unix$DISPLAY -v /tmp/.X11-unix:/tmp/.X11-unix shaoguangleo/centos-difx

如果希望体验一下DiFX的安装，那就开始吧。

最简单的安装方法可以参考一步安装DiFX,star或者follow后提供比较大的压缩包。

操作系统

  • CentOS 6.3
  • CentOS-7.0

DiFX版本

  • DiFX-2.1
  • DiFX-2.4
  • DiFX-2.5.1
  • DiFX-2.6.2

前提配置：

首先更新系统；

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$ yum update
$ yum upgrade

安装依赖软件包

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$ yum install pkgconfig bison  
$ yum install fftw-devel openmpi-dev openmpi-bin
$ yum install openmpi gcc-gfortran libgfortan libgfortan-static expat expat-devel expat-static
$ yum install subversion doxygen
$ yum install automake autoconf
$ yum install libtool* flex*
$ yum install libfftw3-dev libopenmpi-dev libexpat1-dev

安装步骤：

(一）、安装 Intel.Integrated.Performance.Primitives（IPP）

一路默认安装就可以了，默认安装到/opt/intel/ipp中(假设安装的路径为：/opt/intel/ipp/5.3/ia32/)。
添加环境变量：

如果是以前的版本，需要自己指定IPPROOT及相应信息，如下所示：

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export IPPROOT=/opt/intel/ipp/5.3/ia32

对于比较新的版本，可以只指定

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export IPPROOT=/opt/intel/

剩下的交给DiFX去处理。

（二）、pgplot5.2.tar.gz的安装.

参考 Ubuntu/Debain/Fedora/Mac/CentOS 安装PGPLOT

添加环境变量：

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$ export  PGPLOT_DIR=/usr/local/pgplot/
$ export PGPLOT_DEV=/xwindow

（三）、mpich的安装

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$./configure --prefix=/usr/local/mpich 2>&1 | tee c.txt
$ make 2>&1 | tee m.txt
$ make install 2>&1 | tee mi.txt

添加环境变量：

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PATH=/usr/local/mpich/bin:$PATH; export PATH
export MPICXX=/usr/local/mpich/bin/mpicxx

（四）、 fftw的的安装

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$ ./configure --enable-shared --enable-threads --enable-float
$ make -j 2
$ make install
$ make clean
$ ./configure --enable-shared --enable-threads --enable-long-double
$ make -j 4
$ make install
$ make clean
$ ./configure --enable-sse2
$ make -j 4
$ make install
$ make clean
$ updatedb

（五）、 DiFX‐2.1/4的安装

执行./genipppc

修改setup.bash文件的如下部分(深红的部分）

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####### DIFX VERSION ########################
export DIFX_VERSION=DiFX-2.1.1

####### ROOT PATHS ##########################
export DIFXROOT=/usr/local/difx
export DIFX_PREFIX=$DIFXROOT
export PGPLOTDIR=/usr/local/pgplot
export IPPROOT=/opt/intel/ipp/5.3/ia32

####### COMPILER ############################
export MPICXX=/usr/local/mpich/bin/mpicxx

####### USE GFORTRAN IN PREFERENCE TO G77? ##
####### Comment out if not desired ##########

$ mkdir /usr/local/difx
$ Source setup.bash
$ ./install-difx
$ ./install-difx --withhops
$ ./install-difx --withfb
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$ cp init.d/calcserver  /etc/init.d

注：若不能运行成功则应向：DiFX-2.1/mpifxcorr/src/fxmanager.cpp 和 DiFX-2.1/mpifxcorr/utils/dedisperse_difx.cpp 中添加语句 #include ；若还不能成功运行则可根据错误提示安装相应的软件。

（六）、最后安装 portmap 程序包以启动rpc （yum install portmap 、yum install rpc）

（七）、总结如下：

DiFX的安装顺序如下：

  • difxio
  • difxmessage
  • mark5access
  • vdifio
  • mpifxcorr
  • calcserver
  • calcif2
  • difx2fits
  • vex2difx
  • difx2mark4
  • pulsar/difx2profile
  • misc
  • vsi2screen

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'''
\u@\h DiFX-2.4.1 \W> source setup.bash
 DiFX version DiFX-2.4.1 is selected
\u@\h DiFX-2.4.1 \W> ./install-difx
************************************
Getting environmental variables

************************************
Setting up directories

/home/AstroSoft/DiFX2.4.1/lib/pkgconfig/ipp.pc already exists



************************************
Building  difxio/

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
difxio/Makefile.am:43: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
tests/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
utils/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether build environment is sane... yes
Spice disabled
checking whether to enable fftw (default yes)... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for FFTW3... yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating difxio.pc
config.status: creating difxio.spec
config.status: creating difxio/Makefile
config.status: creating tests/Makefile
config.status: creating utils/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
Making all in difxio
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/difxio'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/difxio'
Making all in utils
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/utils'
Making all in tests
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/tests'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/tests'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
Making install in difxio
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/difxio'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/difxio'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libdifxio.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libdifxio.so.0.0.0 /home/AstroSoft/DiFX2.4.1/lib/libdifxio.so.0.0.0
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libdifxio.so.0.0.0 libdifxio.so.0 || { rm -f libdifxio.so.0 && ln -s libdifxio.so.0.0.0 libdifxio.so.0; }; })
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libdifxio.so.0.0.0 libdifxio.so || { rm -f libdifxio.so && ln -s libdifxio.so.0.0.0 libdifxio.so; }; })
libtool: install: /usr/bin/install -c .libs/libdifxio.lai /home/AstroSoft/DiFX2.4.1/lib/libdifxio.la
libtool: install: /usr/bin/install -c .libs/libdifxio.a /home/AstroSoft/DiFX2.4.1/lib/libdifxio.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libdifxio.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libdifxio.a
libtool: finish: PATH="/home/AstroSoft/DiFX2.4.1/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/casa/casa-release-4.7.0-1-el7/bin:/sbin" ldconfig -n /home/AstroSoft/DiFX2.4.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/AstroSoft/DiFX2.4.1/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include/difxio'
 /usr/bin/install -c -m 644 difx_input.h parsedifx.h parsevis.h difx_write.h difx_calculator.h difx_tcal.h '/home/AstroSoft/DiFX2.4.1/include/difxio'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/difxio'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/difxio'
Making install in utils
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/utils'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c psrflag difxcalculator '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/psrflag /home/AstroSoft/DiFX2.4.1/bin/psrflag
libtool: install: /usr/bin/install -c .libs/difxcalculator /home/AstroSoft/DiFX2.4.1/bin/difxcalculator
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/utils'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/utils'
Making install in tests
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/tests'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/tests'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c testdifxinput testparsedifx testparsevis testtcal pbgen testephem teststringarray '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/testdifxinput /home/AstroSoft/DiFX2.4.1/bin/testdifxinput
libtool: install: /usr/bin/install -c .libs/testparsedifx /home/AstroSoft/DiFX2.4.1/bin/testparsedifx
libtool: install: /usr/bin/install -c .libs/testparsevis /home/AstroSoft/DiFX2.4.1/bin/testparsevis
libtool: install: /usr/bin/install -c .libs/testtcal /home/AstroSoft/DiFX2.4.1/bin/testtcal
libtool: install: /usr/bin/install -c .libs/pbgen /home/AstroSoft/DiFX2.4.1/bin/pbgen
libtool: install: /usr/bin/install -c .libs/testephem /home/AstroSoft/DiFX2.4.1/bin/testephem
libtool: install: /usr/bin/install -c .libs/teststringarray /home/AstroSoft/DiFX2.4.1/bin/teststringarray
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/tests'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio/tests'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
make[2]: Nothing to be done for `install-exec-am'.
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/install -c -m 644 difxio.h '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
 /usr/bin/install -c -m 644 difxio.pc '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxio'


************************************
Building  difxmessage/

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
difxmessage/Makefile.am:22: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
mark5ipc/Makefile.am:7: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
utils/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether build environment is sane... yes
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating difxmessage.pc
config.status: creating difxmessage.spec
config.status: creating mark5ipc.pc
config.status: creating difxmessage/Makefile
config.status: creating mark5ipc/Makefile
config.status: creating utils/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
Making all in difxmessage
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/difxmessage'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/difxmessage'
Making all in mark5ipc
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/mark5ipc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/mark5ipc'
Making all in utils
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
Making install in difxmessage
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/difxmessage'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/difxmessage'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libdifxmessage.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libdifxmessage.so.0.0.0 /home/AstroSoft/DiFX2.4.1/lib/libdifxmessage.so.0.0.0
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libdifxmessage.so.0.0.0 libdifxmessage.so.0 || { rm -f libdifxmessage.so.0 && ln -s libdifxmessage.so.0.0.0 libdifxmessage.so.0; }; })
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libdifxmessage.so.0.0.0 libdifxmessage.so || { rm -f libdifxmessage.so && ln -s libdifxmessage.so.0.0.0 libdifxmessage.so; }; })
libtool: install: /usr/bin/install -c .libs/libdifxmessage.lai /home/AstroSoft/DiFX2.4.1/lib/libdifxmessage.la
libtool: install: /usr/bin/install -c .libs/libdifxmessage.a /home/AstroSoft/DiFX2.4.1/lib/libdifxmessage.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libdifxmessage.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libdifxmessage.a
libtool: finish: PATH="/home/AstroSoft/DiFX2.4.1/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/casa/casa-release-4.7.0-1-el7/bin:/sbin" ldconfig -n /home/AstroSoft/DiFX2.4.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/AstroSoft/DiFX2.4.1/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include/difxmessage'
 /usr/bin/install -c -m 644 difxmessageinternal.h '/home/AstroSoft/DiFX2.4.1/include/difxmessage'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/difxmessage'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/difxmessage'
Making install in mark5ipc
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/mark5ipc'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/mark5ipc'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libmark5ipc.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libmark5ipc.so.0.0.0 /home/AstroSoft/DiFX2.4.1/lib/libmark5ipc.so.0.0.0
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libmark5ipc.so.0.0.0 libmark5ipc.so.0 || { rm -f libmark5ipc.so.0 && ln -s libmark5ipc.so.0.0.0 libmark5ipc.so.0; }; })
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libmark5ipc.so.0.0.0 libmark5ipc.so || { rm -f libmark5ipc.so && ln -s libmark5ipc.so.0.0.0 libmark5ipc.so; }; })
libtool: install: /usr/bin/install -c .libs/libmark5ipc.lai /home/AstroSoft/DiFX2.4.1/lib/libmark5ipc.la
libtool: install: /usr/bin/install -c .libs/libmark5ipc.a /home/AstroSoft/DiFX2.4.1/lib/libmark5ipc.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libmark5ipc.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libmark5ipc.a
libtool: finish: PATH="/home/AstroSoft/DiFX2.4.1/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/casa/casa-release-4.7.0-1-el7/bin:/sbin" ldconfig -n /home/AstroSoft/DiFX2.4.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/AstroSoft/DiFX2.4.1/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/mark5ipc'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/mark5ipc'
Making install in utils
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/utils'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c testdifxmessagesend testdifxmessagereceive testdifxmessagereceivecond testdifxmessagedrivestats testseqnumbers testm5lock sendtransient sendsmart updatedifxclock difxlog probemachine '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/testdifxmessagesend /home/AstroSoft/DiFX2.4.1/bin/testdifxmessagesend
libtool: install: /usr/bin/install -c .libs/testdifxmessagereceive /home/AstroSoft/DiFX2.4.1/bin/testdifxmessagereceive
libtool: install: /usr/bin/install -c .libs/testdifxmessagereceivecond /home/AstroSoft/DiFX2.4.1/bin/testdifxmessagereceivecond
libtool: install: /usr/bin/install -c .libs/testdifxmessagedrivestats /home/AstroSoft/DiFX2.4.1/bin/testdifxmessagedrivestats
libtool: install: /usr/bin/install -c .libs/testseqnumbers /home/AstroSoft/DiFX2.4.1/bin/testseqnumbers
libtool: install: /usr/bin/install -c .libs/testm5lock /home/AstroSoft/DiFX2.4.1/bin/testm5lock
libtool: install: /usr/bin/install -c .libs/sendtransient /home/AstroSoft/DiFX2.4.1/bin/sendtransient
libtool: install: /usr/bin/install -c .libs/sendsmart /home/AstroSoft/DiFX2.4.1/bin/sendsmart
libtool: install: /usr/bin/install -c .libs/updatedifxclock /home/AstroSoft/DiFX2.4.1/bin/updatedifxclock
libtool: install: /usr/bin/install -c .libs/difxlog /home/AstroSoft/DiFX2.4.1/bin/difxlog
libtool: install: /usr/bin/install -c .libs/probemachine /home/AstroSoft/DiFX2.4.1/bin/probemachine
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c cpumon getsmart errormon errormon2 mk5mon smartmon statemon restartdifx difxdiagnosticmon mk5display difxwatch '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/utils'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage/utils'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
make[2]: Nothing to be done for `install-exec-am'.
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/install -c -m 644 difxmessage.h mark5ipc.h '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
 /usr/bin/install -c -m 644 difxmessage.pc mark5ipc.pc '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/difxmessage'


************************************
Building  mark5access/

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
bbsum/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
examples/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
mark5access/Makefile.am:26: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether gcc and cc understand -c and -o together... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking whether build environment is sane... yes
checking for erf in -lm... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for FFTW3... yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mark5access.pc
config.status: creating mark5access.spec
config.status: creating mark5access/Makefile
config.status: creating bbsum/Makefile
config.status: creating examples/Makefile
config.status: creating doc/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
Making all in mark5access
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/mark5access'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/mark5access'
Making all in bbsum
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/bbsum'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/bbsum'
Making all in examples
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/examples'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/examples'
Making all in doc
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/doc'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/doc'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
Making install in mark5access
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/mark5access'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/mark5access'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libmark5access.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libmark5access.so.0.0.0 /home/AstroSoft/DiFX2.4.1/lib/libmark5access.so.0.0.0
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libmark5access.so.0.0.0 libmark5access.so.0 || { rm -f libmark5access.so.0 && ln -s libmark5access.so.0.0.0 libmark5access.so.0; }; })
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libmark5access.so.0.0.0 libmark5access.so || { rm -f libmark5access.so && ln -s libmark5access.so.0.0.0 libmark5access.so; }; })
libtool: install: /usr/bin/install -c .libs/libmark5access.lai /home/AstroSoft/DiFX2.4.1/lib/libmark5access.la
libtool: install: /usr/bin/install -c .libs/libmark5access.a /home/AstroSoft/DiFX2.4.1/lib/libmark5access.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libmark5access.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libmark5access.a
libtool: finish: PATH="/home/AstroSoft/DiFX2.4.1/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/casa/casa-release-4.7.0-1-el7/bin:/sbin" ldconfig -n /home/AstroSoft/DiFX2.4.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/AstroSoft/DiFX2.4.1/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include/mark5access'
 /usr/bin/install -c -m 644 mark5_stream.h mark5bfix.h mark5bfile.h '/home/AstroSoft/DiFX2.4.1/include/mark5access'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/mark5access'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/mark5access'
Making install in bbsum
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/bbsum'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/bbsum'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c bbsum '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/bbsum /home/AstroSoft/DiFX2.4.1/bin/bbsum
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/bbsum'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/bbsum'
Making install in examples
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/examples'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/examples'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c directory2filelist fixmark5b m5bstate m5bsum m5d m5fold m5timeseries m5tsys m5test m5time m5slice m5findformats test5b test_mark5_stream test_unpacker m5pcal m5spec m5fb zerocorr '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/directory2filelist /home/AstroSoft/DiFX2.4.1/bin/directory2filelist
libtool: install: /usr/bin/install -c .libs/fixmark5b /home/AstroSoft/DiFX2.4.1/bin/fixmark5b
libtool: install: /usr/bin/install -c .libs/m5bstate /home/AstroSoft/DiFX2.4.1/bin/m5bstate
libtool: install: /usr/bin/install -c .libs/m5bsum /home/AstroSoft/DiFX2.4.1/bin/m5bsum
libtool: install: /usr/bin/install -c .libs/m5d /home/AstroSoft/DiFX2.4.1/bin/m5d
libtool: install: /usr/bin/install -c .libs/m5fold /home/AstroSoft/DiFX2.4.1/bin/m5fold
libtool: install: /usr/bin/install -c .libs/m5timeseries /home/AstroSoft/DiFX2.4.1/bin/m5timeseries
libtool: install: /usr/bin/install -c .libs/m5tsys /home/AstroSoft/DiFX2.4.1/bin/m5tsys
libtool: install: /usr/bin/install -c .libs/m5test /home/AstroSoft/DiFX2.4.1/bin/m5test
libtool: install: /usr/bin/install -c .libs/m5time /home/AstroSoft/DiFX2.4.1/bin/m5time
libtool: install: /usr/bin/install -c .libs/m5slice /home/AstroSoft/DiFX2.4.1/bin/m5slice
libtool: install: /usr/bin/install -c .libs/m5findformats /home/AstroSoft/DiFX2.4.1/bin/m5findformats
libtool: install: /usr/bin/install -c .libs/test5b /home/AstroSoft/DiFX2.4.1/bin/test5b
libtool: install: /usr/bin/install -c .libs/test_mark5_stream /home/AstroSoft/DiFX2.4.1/bin/test_mark5_stream
libtool: install: /usr/bin/install -c .libs/test_unpacker /home/AstroSoft/DiFX2.4.1/bin/test_unpacker
libtool: install: /usr/bin/install -c .libs/m5pcal /home/AstroSoft/DiFX2.4.1/bin/m5pcal
libtool: install: /usr/bin/install -c .libs/m5spec /home/AstroSoft/DiFX2.4.1/bin/m5spec
libtool: install: /usr/bin/install -c .libs/m5fb /home/AstroSoft/DiFX2.4.1/bin/m5fb
libtool: install: /usr/bin/install -c .libs/zerocorr /home/AstroSoft/DiFX2.4.1/bin/zerocorr
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/examples'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/examples'
Making install in doc
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/doc'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/doc'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/doc'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access/doc'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
make[2]: Nothing to be done for `install-exec-am'.
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/install -c -m 644 mark5access.h '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
 /usr/bin/install -c -m 644 mark5access.pc '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/mark5access'


************************************
Building  vdifio/

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIR, `m4'.
libtoolize: copying file `m4/libtool.m4'
libtoolize: copying file `m4/ltoptions.m4'
libtoolize: copying file `m4/ltsugar.m4'
libtoolize: copying file `m4/ltversion.m4'
libtoolize: copying file `m4/lt~obsolete.m4'
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
utils/Makefile.am:1: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS')
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of size_t... 8
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking for OpenMP flag of C compiler... -fopenmp
checking whether byte ordering is bigendian... no
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating vdifio.spec
config.status: creating src/Makefile
config.status: creating utils/Makefile
config.status: creating vdifio.pc
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/src'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/src'
Making all in utils
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libvdifio.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libvdifio.so.0.0.0 /home/AstroSoft/DiFX2.4.1/lib/libvdifio.so.0.0.0
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libvdifio.so.0.0.0 libvdifio.so.0 || { rm -f libvdifio.so.0 && ln -s libvdifio.so.0.0.0 libvdifio.so.0; }; })
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libvdifio.so.0.0.0 libvdifio.so || { rm -f libvdifio.so && ln -s libvdifio.so.0.0.0 libvdifio.so; }; })
libtool: install: /usr/bin/install -c .libs/libvdifio.lai /home/AstroSoft/DiFX2.4.1/lib/libvdifio.la
libtool: install: /usr/bin/install -c .libs/libvdifio.a /home/AstroSoft/DiFX2.4.1/lib/libvdifio.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libvdifio.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libvdifio.a
libtool: finish: PATH="/home/AstroSoft/DiFX2.4.1/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/casa/casa-release-4.7.0-1-el7/bin:/sbin" ldconfig -n /home/AstroSoft/DiFX2.4.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/AstroSoft/DiFX2.4.1/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/install -c -m 644 vdifio.h '/home/AstroSoft/DiFX2.4.1/include'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/src'
Making install in utils
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/utils'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c stripVDIF captureUDPVDIF multi2singlethreadVDIF padVDIF cleanVDIF fakemultiVDIF extractSingleVDIFThread extractVDIFThreads countVDIFPackets printVDIF printVDIFgaps printVDIFheader peekVDIF searchVDIF vdif2to8 vmux vsum '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/stripVDIF /home/AstroSoft/DiFX2.4.1/bin/stripVDIF
libtool: install: /usr/bin/install -c .libs/captureUDPVDIF /home/AstroSoft/DiFX2.4.1/bin/captureUDPVDIF
libtool: install: /usr/bin/install -c .libs/multi2singlethreadVDIF /home/AstroSoft/DiFX2.4.1/bin/multi2singlethreadVDIF
libtool: install: /usr/bin/install -c .libs/padVDIF /home/AstroSoft/DiFX2.4.1/bin/padVDIF
libtool: install: /usr/bin/install -c .libs/cleanVDIF /home/AstroSoft/DiFX2.4.1/bin/cleanVDIF
libtool: install: /usr/bin/install -c .libs/fakemultiVDIF /home/AstroSoft/DiFX2.4.1/bin/fakemultiVDIF
libtool: install: /usr/bin/install -c .libs/extractSingleVDIFThread /home/AstroSoft/DiFX2.4.1/bin/extractSingleVDIFThread
libtool: install: /usr/bin/install -c .libs/extractVDIFThreads /home/AstroSoft/DiFX2.4.1/bin/extractVDIFThreads
libtool: install: /usr/bin/install -c .libs/countVDIFPackets /home/AstroSoft/DiFX2.4.1/bin/countVDIFPackets
libtool: install: /usr/bin/install -c .libs/printVDIF /home/AstroSoft/DiFX2.4.1/bin/printVDIF
libtool: install: /usr/bin/install -c .libs/printVDIFgaps /home/AstroSoft/DiFX2.4.1/bin/printVDIFgaps
libtool: install: /usr/bin/install -c .libs/printVDIFheader /home/AstroSoft/DiFX2.4.1/bin/printVDIFheader
libtool: install: /usr/bin/install -c .libs/peekVDIF /home/AstroSoft/DiFX2.4.1/bin/peekVDIF
libtool: install: /usr/bin/install -c .libs/searchVDIF /home/AstroSoft/DiFX2.4.1/bin/searchVDIF
libtool: install: /usr/bin/install -c .libs/vdif2to8 /home/AstroSoft/DiFX2.4.1/bin/vdif2to8
libtool: install: /usr/bin/install -c .libs/vmux /home/AstroSoft/DiFX2.4.1/bin/vmux
libtool: install: /usr/bin/install -c .libs/vsum /home/AstroSoft/DiFX2.4.1/bin/vsum
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c vdifbstate vdiffold vdifd vdifspec '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/utils'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio/utils'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
make[2]: Nothing to be done for `install-exec-am'.
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
 /usr/bin/install -c -m 644 vdifio.pc '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/libraries/vdifio'

************************************
Making mpifxcorr

Reconfiguring mpifxcorr
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether /home/AstroSoft/mpich/bin/mpicxx accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of /home/AstroSoft/mpich/bin/mpicxx... gcc3
./configure: line 3430: AX_OPENMP: command not found
checking for ranlib... ranlib
checking how to run the C++ preprocessor... /home/AstroSoft/mpich/bin/mpicxx -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for IPP... yes
checking for pthread_create in -lpthread... yes
checking for DIFXMESSAGE... yes
checking for VDIFIO... yes
checking for MARK5IPC... yes
configure: Did not find STREAMSTOR in /home/leo/Downloads/DiFX_Install/DiFX-2.4.1/pkgconfig:/home/AstroSoft/DiFX2.4.1/lib/pkgconfig
No suitable streamstor.pc file was found so the native
Mark5 support will be suppressed.  See the documentation
if you are surprised by this.
checking for M5ACCESS... yes
checking for clock_gettime in -lrt... yes
CXXFLAGS = -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include     
LIBS = -L/home/AstroSoft/DiFX2.4.1/lib -lmark5access   -L/home/AstroSoft/DiFX2.4.1/lib -lvdifio    -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lippsem64t -lguide -lippvmem64t -lippcoreem64t   -lpthread  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -L/home/AstroSoft/DiFX2.4.1/lib -lmark5ipc   -lrt -lpthread
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating mpifxcorr.pc
config.status: creating fxcorr.pc
config.status: creating src/Makefile
config.status: creating src/architecture.h
config.status: creating scripts/Makefile
config.status: creating utils/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src'
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT pcal.o -MD -MP -MF .deps/pcal.Tpo -c -o pcal.o pcal.cpp
mv -f .deps/pcal.Tpo .deps/pcal.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT configuration.o -MD -MP -MF .deps/configuration.Tpo -c -o configuration.o configuration.cpp
configuration.cpp:2937:16: warning: multi-character character constant [-Wmultichar]
     if(sync != 'BASE')
                ^
mv -f .deps/configuration.Tpo .deps/configuration.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mode.o -MD -MP -MF .deps/mode.Tpo -c -o mode.o mode.cpp
mv -f .deps/mode.Tpo .deps/mode.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT core.o -MD -MP -MF .deps/core.Tpo -c -o core.o core.cpp
mv -f .deps/core.Tpo .deps/core.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT datastream.o -MD -MP -MF .deps/datastream.Tpo -c -o datastream.o datastream.cpp
mv -f .deps/datastream.Tpo .deps/datastream.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT polyco.o -MD -MP -MF .deps/polyco.Tpo -c -o polyco.o polyco.cpp
mv -f .deps/polyco.Tpo .deps/polyco.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mk5.o -MD -MP -MF .deps/mk5.Tpo -c -o mk5.o mk5.cpp
mk5.cpp:805:2: warning: #warning "WFB: The next statement is fishy to me.  Shouldn't this be the actual number of bytes memcpyed" [-Wcpp]
 #warning "WFB: The next statement is fishy to me.  Shouldn't this be the actual number of bytes memcpyed"
  ^
mk5.cpp:879:2: warning: #warning "WFB: This next statement is fishy to me: what if some leftover bytes were copied?  That count gets lost." [-Wcpp]
 #warning "WFB: This next statement is fishy to me: what if some leftover bytes were copied?  That count gets lost."
  ^
mv -f .deps/mk5.Tpo .deps/mk5.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mk5mode.o -MD -MP -MF .deps/mk5mode.Tpo -c -o mk5mode.o mk5mode.cpp
mv -f .deps/mk5mode.Tpo .deps/mk5mode.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT fxmanager.o -MD -MP -MF .deps/fxmanager.Tpo -c -o fxmanager.o fxmanager.cpp
mv -f .deps/fxmanager.Tpo .deps/fxmanager.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT model.o -MD -MP -MF .deps/model.Tpo -c -o model.o model.cpp
mv -f .deps/model.Tpo .deps/model.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT visibility.o -MD -MP -MF .deps/visibility.Tpo -c -o visibility.o visibility.cpp
mv -f .deps/visibility.Tpo .deps/visibility.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT alert.o -MD -MP -MF .deps/alert.Tpo -c -o alert.o alert.cpp
mv -f .deps/alert.Tpo .deps/alert.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT switchedpower.o -MD -MP -MF .deps/switchedpower.Tpo -c -o switchedpower.o switchedpower.cpp
mv -f .deps/switchedpower.Tpo .deps/switchedpower.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mark5bfile.o -MD -MP -MF .deps/mark5bfile.Tpo -c -o mark5bfile.o mark5bfile.cpp
mv -f .deps/mark5bfile.Tpo .deps/mark5bfile.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT vdiffile.o -MD -MP -MF .deps/vdiffile.Tpo -c -o vdiffile.o vdiffile.cpp
mv -f .deps/vdiffile.Tpo .deps/vdiffile.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT vdiffake.o -MD -MP -MF .deps/vdiffake.Tpo -c -o vdiffake.o vdiffake.cpp
mv -f .deps/vdiffake.Tpo .deps/vdiffake.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT vdifnetwork.o -MD -MP -MF .deps/vdifnetwork.Tpo -c -o vdifnetwork.o vdifnetwork.cpp
mv -f .deps/vdifnetwork.Tpo .deps/vdifnetwork.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT datamuxer.o -MD -MP -MF .deps/datamuxer.Tpo -c -o datamuxer.o datamuxer.cpp
mv -f .deps/datamuxer.Tpo .deps/datamuxer.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT nativemk5_stubs.o -MD -MP -MF .deps/nativemk5_stubs.Tpo -c -o nativemk5_stubs.o nativemk5_stubs.cpp
mv -f .deps/nativemk5_stubs.Tpo .deps/nativemk5_stubs.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mark5bmark5_stubs.o -MD -MP -MF .deps/mark5bmark5_stubs.Tpo -c -o mark5bmark5_stubs.o mark5bmark5_stubs.cpp
mv -f .deps/mark5bmark5_stubs.Tpo .deps/mark5bmark5_stubs.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT vdifmark5_stubs.o -MD -MP -MF .deps/vdifmark5_stubs.Tpo -c -o vdifmark5_stubs.o vdifmark5_stubs.cpp
mv -f .deps/vdifmark5_stubs.Tpo .deps/vdifmark5_stubs.Po
rm -f libmpifxcorr.a
ar cru libmpifxcorr.a pcal.o configuration.o mode.o core.o datastream.o polyco.o mk5.o mk5mode.o fxmanager.o model.o visibility.o alert.o switchedpower.o mark5bfile.o vdiffile.o vdiffake.o vdifnetwork.o datamuxer.o nativemk5_stubs.o mark5bmark5_stubs.o vdifmark5_stubs.o
ranlib libmpifxcorr.a
rm -f libfxcorr.a
ar cru libfxcorr.a configuration.o pcal.o mode.o mk5mode.o polyco.o visibility.o model.o datamuxer.o alert.o
ranlib libfxcorr.a
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mpifxcorr.o -MD -MP -MF .deps/mpifxcorr.Tpo -c -o mpifxcorr.o mpifxcorr.cpp
mv -f .deps/mpifxcorr.Tpo .deps/mpifxcorr.Po
/home/AstroSoft/mpich/bin/mpicxx  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include        -o mpifxcorr mpifxcorr.o fxmanager.o core.o datastream.o visibility.o configuration.o mode.o model.o mk5.o mk5mode.o datamuxer.o mark5bfile.o vdiffile.o vdiffake.o vdifnetwork.o polyco.o alert.o pcal.o switchedpower.o nativemk5_stubs.o mark5bmark5_stubs.o vdifmark5_stubs.o  -L/home/AstroSoft/DiFX2.4.1/lib -lmark5access   -L/home/AstroSoft/DiFX2.4.1/lib -lvdifio    -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lippsem64t -lguide -lippvmem64t -lippcoreem64t   -lpthread  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -L/home/AstroSoft/DiFX2.4.1/lib -lmark5ipc   -lrt -lpthread
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-mpifxcorr.o -MD -MP -MF .deps/neuteredmpifxcorr-mpifxcorr.Tpo -c -o neuteredmpifxcorr-mpifxcorr.o `test -f 'mpifxcorr.cpp' || echo './'`mpifxcorr.cpp
mv -f .deps/neuteredmpifxcorr-mpifxcorr.Tpo .deps/neuteredmpifxcorr-mpifxcorr.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-fxmanager.o -MD -MP -MF .deps/neuteredmpifxcorr-fxmanager.Tpo -c -o neuteredmpifxcorr-fxmanager.o `test -f 'fxmanager.cpp' || echo './'`fxmanager.cpp
mv -f .deps/neuteredmpifxcorr-fxmanager.Tpo .deps/neuteredmpifxcorr-fxmanager.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-core.o -MD -MP -MF .deps/neuteredmpifxcorr-core.Tpo -c -o neuteredmpifxcorr-core.o `test -f 'core.cpp' || echo './'`core.cpp
mv -f .deps/neuteredmpifxcorr-core.Tpo .deps/neuteredmpifxcorr-core.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-datastream.o -MD -MP -MF .deps/neuteredmpifxcorr-datastream.Tpo -c -o neuteredmpifxcorr-datastream.o `test -f 'datastream.cpp' || echo './'`datastream.cpp
mv -f .deps/neuteredmpifxcorr-datastream.Tpo .deps/neuteredmpifxcorr-datastream.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-mk5.o -MD -MP -MF .deps/neuteredmpifxcorr-mk5.Tpo -c -o neuteredmpifxcorr-mk5.o `test -f 'mk5.cpp' || echo './'`mk5.cpp
mk5.cpp:805:2: warning: #warning "WFB: The next statement is fishy to me.  Shouldn't this be the actual number of bytes memcpyed" [-Wcpp]
 #warning "WFB: The next statement is fishy to me.  Shouldn't this be the actual number of bytes memcpyed"
  ^
mk5.cpp:879:2: warning: #warning "WFB: This next statement is fishy to me: what if some leftover bytes were copied?  That count gets lost." [-Wcpp]
 #warning "WFB: This next statement is fishy to me: what if some leftover bytes were copied?  That count gets lost."
  ^
mv -f .deps/neuteredmpifxcorr-mk5.Tpo .deps/neuteredmpifxcorr-mk5.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-switchedpower.o -MD -MP -MF .deps/neuteredmpifxcorr-switchedpower.Tpo -c -o neuteredmpifxcorr-switchedpower.o `test -f 'switchedpower.cpp' || echo './'`switchedpower.cpp
mv -f .deps/neuteredmpifxcorr-switchedpower.Tpo .deps/neuteredmpifxcorr-switchedpower.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-mark5bfile.o -MD -MP -MF .deps/neuteredmpifxcorr-mark5bfile.Tpo -c -o neuteredmpifxcorr-mark5bfile.o `test -f 'mark5bfile.cpp' || echo './'`mark5bfile.cpp
mv -f .deps/neuteredmpifxcorr-mark5bfile.Tpo .deps/neuteredmpifxcorr-mark5bfile.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-vdiffile.o -MD -MP -MF .deps/neuteredmpifxcorr-vdiffile.Tpo -c -o neuteredmpifxcorr-vdiffile.o `test -f 'vdiffile.cpp' || echo './'`vdiffile.cpp
mv -f .deps/neuteredmpifxcorr-vdiffile.Tpo .deps/neuteredmpifxcorr-vdiffile.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-vdiffake.o -MD -MP -MF .deps/neuteredmpifxcorr-vdiffake.Tpo -c -o neuteredmpifxcorr-vdiffake.o `test -f 'vdiffake.cpp' || echo './'`vdiffake.cpp
mv -f .deps/neuteredmpifxcorr-vdiffake.Tpo .deps/neuteredmpifxcorr-vdiffake.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-vdifnetwork.o -MD -MP -MF .deps/neuteredmpifxcorr-vdifnetwork.Tpo -c -o neuteredmpifxcorr-vdifnetwork.o `test -f 'vdifnetwork.cpp' || echo './'`vdifnetwork.cpp
mv -f .deps/neuteredmpifxcorr-vdifnetwork.Tpo .deps/neuteredmpifxcorr-vdifnetwork.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-datamuxer.o -MD -MP -MF .deps/neuteredmpifxcorr-datamuxer.Tpo -c -o neuteredmpifxcorr-datamuxer.o `test -f 'datamuxer.cpp' || echo './'`datamuxer.cpp
mv -f .deps/neuteredmpifxcorr-datamuxer.Tpo .deps/neuteredmpifxcorr-datamuxer.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-nativemk5_stubs.o -MD -MP -MF .deps/neuteredmpifxcorr-nativemk5_stubs.Tpo -c -o neuteredmpifxcorr-nativemk5_stubs.o `test -f 'nativemk5_stubs.cpp' || echo './'`nativemk5_stubs.cpp
mv -f .deps/neuteredmpifxcorr-nativemk5_stubs.Tpo .deps/neuteredmpifxcorr-nativemk5_stubs.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-mark5bmark5_stubs.o -MD -MP -MF .deps/neuteredmpifxcorr-mark5bmark5_stubs.Tpo -c -o neuteredmpifxcorr-mark5bmark5_stubs.o `test -f 'mark5bmark5_stubs.cpp' || echo './'`mark5bmark5_stubs.cpp
mv -f .deps/neuteredmpifxcorr-mark5bmark5_stubs.Tpo .deps/neuteredmpifxcorr-mark5bmark5_stubs.Po
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT neuteredmpifxcorr-vdifmark5_stubs.o -MD -MP -MF .deps/neuteredmpifxcorr-vdifmark5_stubs.Tpo -c -o neuteredmpifxcorr-vdifmark5_stubs.o `test -f 'vdifmark5_stubs.cpp' || echo './'`vdifmark5_stubs.cpp
mv -f .deps/neuteredmpifxcorr-vdifmark5_stubs.Tpo .deps/neuteredmpifxcorr-vdifmark5_stubs.Po
/home/AstroSoft/mpich/bin/mpicxx -DNEUTERED_DIFX  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include        -o neuteredmpifxcorr neuteredmpifxcorr-mpifxcorr.o neuteredmpifxcorr-fxmanager.o neuteredmpifxcorr-core.o neuteredmpifxcorr-datastream.o neuteredmpifxcorr-mk5.o neuteredmpifxcorr-switchedpower.o neuteredmpifxcorr-mark5bfile.o neuteredmpifxcorr-vdiffile.o neuteredmpifxcorr-vdiffake.o neuteredmpifxcorr-vdifnetwork.o neuteredmpifxcorr-datamuxer.o neuteredmpifxcorr-nativemk5_stubs.o neuteredmpifxcorr-mark5bmark5_stubs.o neuteredmpifxcorr-vdifmark5_stubs.o ../src/libfxcorr.a -L/home/AstroSoft/DiFX2.4.1/lib -lmark5access   -L/home/AstroSoft/DiFX2.4.1/lib -lvdifio    -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lippsem64t -lguide -lippvmem64t -lippcoreem64t   -lpthread  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -L/home/AstroSoft/DiFX2.4.1/lib -lmark5ipc   -lrt -lpthread
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src'
Making all in scripts
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/scripts'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/scripts'
Making all in utils
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/utils'
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -I./../src/ -I../src/ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT checkmpifxcorr.o -MD -MP -MF .deps/checkmpifxcorr.Tpo -c -o checkmpifxcorr.o checkmpifxcorr.cpp
mv -f .deps/checkmpifxcorr.Tpo .deps/checkmpifxcorr.Po
/home/AstroSoft/mpich/bin/mpicxx -I./../src/ -I../src/ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include        -o checkmpifxcorr checkmpifxcorr.o ../src/libmpifxcorr.a -L/home/AstroSoft/DiFX2.4.1/lib -lmark5access   -L/home/AstroSoft/DiFX2.4.1/lib -lvdifio    -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lippsem64t -lguide -lippvmem64t -lippcoreem64t   -lpthread  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -L/home/AstroSoft/DiFX2.4.1/lib -lmark5ipc   -lrt -lpthread
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -I./../src/ -I../src/ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT dedisperse_difx.o -MD -MP -MF .deps/dedisperse_difx.Tpo -c -o dedisperse_difx.o dedisperse_difx.cpp
mv -f .deps/dedisperse_difx.Tpo .deps/dedisperse_difx.Po
/home/AstroSoft/mpich/bin/mpicxx -I./../src/ -I../src/ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include        -o dedisperse_difx dedisperse_difx.o ../src/libmpifxcorr.a -L/home/AstroSoft/DiFX2.4.1/lib -lmark5access   -L/home/AstroSoft/DiFX2.4.1/lib -lvdifio    -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lippsem64t -lguide -lippvmem64t -lippcoreem64t   -lpthread  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -L/home/AstroSoft/DiFX2.4.1/lib -lmark5ipc   -lrt -lpthread
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..    -I./../src/ -I../src/ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -MT mpispeed.o -MD -MP -MF .deps/mpispeed.Tpo -c -o mpispeed.o mpispeed.cpp
mv -f .deps/mpispeed.Tpo .deps/mpispeed.Po
/home/AstroSoft/mpich/bin/mpicxx -I./../src/ -I../src/ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/vdifio   -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include        -o mpispeed mpispeed.o  -L/home/AstroSoft/DiFX2.4.1/lib -lmark5access   -L/home/AstroSoft/DiFX2.4.1/lib -lvdifio    -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lippsem64t -lguide -lippvmem64t -lippcoreem64t   -lpthread  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -L/home/AstroSoft/DiFX2.4.1/lib -lmark5ipc   -lrt -lpthread
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c mpifxcorr neuteredmpifxcorr '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /usr/bin/install -c -m 644  libmpifxcorr.a libfxcorr.a '/home/AstroSoft/DiFX2.4.1/lib'
 ( cd '/home/AstroSoft/DiFX2.4.1/lib' && ranlib libmpifxcorr.a )
 ( cd '/home/AstroSoft/DiFX2.4.1/lib' && ranlib libfxcorr.a )
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/install -c -m 644 fxmanager.h pcal.h core.h datastream.h architecture.h visibility.h configuration.h mk5.h mk5mode.h model.h mode.h polyco.h mark5dir.h nativemk5.h watchdog.h mark5utils.h mpifxcorr.h switchedpower.h datamuxer.h mark5bfile.h vdiffile.h vdiffake.h vdifnetwork.h alert.h '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include/mpifxcorr'
 /usr/bin/install -c -m 644 fxmanager.h pcal.h core.h datastream.h architecture.h visibility.h configuration.h mk5.h mk5mode.h model.h mode.h polyco.h mark5dir.h nativemk5.h watchdog.h mark5utils.h mpifxcorr.h switchedpower.h datamuxer.h mark5bfile.h vdiffile.h vdiffake.h vdifnetwork.h alert.h '/home/AstroSoft/DiFX2.4.1/include/mpifxcorr'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src'
Making install in scripts
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/scripts'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/scripts'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c stopmpifxcorr '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/scripts'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/scripts'
Making install in utils
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/utils'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c checkmpifxcorr dedisperse_difx mpispeed '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/utils'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/utils'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
make[2]: Nothing to be done for `install-exec-am'.
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
 /usr/bin/install -c -m 644 mpifxcorr.pc fxcorr.pc '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr'


************************************
Building  calcserver

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
configure.ac:3: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated.  For more info, see:
configure.ac:3: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether build environment is sane... yes
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for sin in -lm... yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating startCalcServer
config.status: creating src/Makefile
config.status: creating calc9.1/Makefile
config.status: creating init.d/calcserver
config.status: creating data/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
Making all in calc9.1
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/calc9.1'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/calc9.1'
Making all in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/src'
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT CALC5Server.o -MD -MP -MF .deps/CALC5Server.Tpo -c -o CALC5Server.o CALC5Server.c
CALC5Server.c: In function ‘calcprog_1’:
CALC5Server.c:333:2: warning: passing argument 2 of ‘svc_sendreply’ from incompatible pointer type [enabled by default]
  if (!svc_sendreply (pTransport, xdr_void, NULL))
  ^
In file included from /usr/include/rpc/rpc.h:56:0,
                 from CALC5Server.c:3:
/usr/include/rpc/svc.h:244:15: note: expected ‘xdrproc_t’ but argument is of type ‘bool_t (*)(void)’
 extern bool_t svc_sendreply (SVCXPRT *__xprt, xdrproc_t __xdr_results,
               ^
CALC5Server.c:347:5: warning: passing argument 2 of ‘pTransport->xp_ops->xp_getargs’ from incompatible pointer type [enabled by default]
     if (!svc_getargs (pTransport, xdr_getCALC_arg, (char *)&argument))
     ^
CALC5Server.c:347:5: note: expected ‘xdrproc_t’ but argument is of type ‘bool_t (*)()’
CALC5Server.c:483:5: warning: passing argument 2 of ‘svc_sendreply’ from incompatible pointer type [enabled by default]
     if (!svc_sendreply (pTransport, xdr_getCALC_res, (char *)&result))
     ^
In file included from /usr/include/rpc/rpc.h:56:0,
                 from CALC5Server.c:3:
/usr/include/rpc/svc.h:244:15: note: expected ‘xdrproc_t’ but argument is of type ‘bool_t (*)()’
 extern bool_t svc_sendreply (SVCXPRT *__xprt, xdrproc_t __xdr_results,
               ^
CALC5Server.c:487:5: warning: passing argument 2 of ‘pTransport->xp_ops->xp_freeargs’ from incompatible pointer type [enabled by default]
     if (!svc_freeargs (pTransport, xdr_getCALC_arg, (char *)&argument))
     ^
CALC5Server.c:487:5: note: expected ‘xdrproc_t’ but argument is of type ‘bool_t (*)()’
mv -f .deps/CALC5Server.Tpo .deps/CALC5Server.Po
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT CALC_xdr.o -MD -MP -MF .deps/CALC_xdr.Tpo -c -o CALC_xdr.o CALC_xdr.c
mv -f .deps/CALC_xdr.Tpo .deps/CALC_xdr.Po
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT ingdec.o -MD -MP -MF .deps/ingdec.Tpo -c -o ingdec.o ingdec.c
mv -f .deps/ingdec.Tpo .deps/ingdec.Po
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT ingra.o -MD -MP -MF .deps/ingra.Tpo -c -o ingra.o ingra.c
mv -f .deps/ingra.Tpo .deps/ingra.Po
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT iword.o -MD -MP -MF .deps/iword.Tpo -c -o iword.o iword.c
mv -f .deps/iword.Tpo .deps/iword.Po
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT mjd2str.o -MD -MP -MF .deps/mjd2str.Tpo -c -o mjd2str.o mjd2str.c
mv -f .deps/mjd2str.Tpo .deps/mjd2str.Po
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT time2str.o -MD -MP -MF .deps/time2str.Tpo -c -o time2str.o time2str.c
mv -f .deps/time2str.Tpo .deps/time2str.Po
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2   -o CalcServer CALC5Server.o CALC_xdr.o cvrtuc.o ingdec.o ingra.o iword.o mjd2str.o sindex.o time2str.o ../calc9.1/libCalc.la -lm
libtool: link: gcc -g -O2 -o .libs/CalcServer CALC5Server.o CALC_xdr.o cvrtuc.o ingdec.o ingra.o iword.o mjd2str.o sindex.o time2str.o  ../calc9.1/.libs/libCalc.so -lm -Wl,-rpath -Wl,/opt/DiFX-2.4/lib
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_LIBM=1 -I.     -g -O2 -MT checkcalc.o -MD -MP -MF .deps/checkcalc.Tpo -c -o checkcalc.o checkcalc.c
mv -f .deps/checkcalc.Tpo .deps/checkcalc.Po
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2   -o checkCalcServer checkcalc.o CALC_xdr.o  -lm
libtool: link: gcc -g -O2 -o checkCalcServer checkcalc.o CALC_xdr.o  -lm
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/src'
Making all in data
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/data'
make[1]: Nothing to be done for `all'.
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/data'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
make[1]: Nothing to be done for `all-am'.
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
Making install in calc9.1
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/calc9.1'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/calc9.1'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libCalc.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libCalc-9.1.so /home/AstroSoft/DiFX2.4.1/lib/libCalc-9.1.so
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libCalc-9.1.so libCalc.so || { rm -f libCalc.so && ln -s libCalc-9.1.so libCalc.so; }; })
libtool: install: /usr/bin/install -c .libs/libCalc.lai /home/AstroSoft/DiFX2.4.1/lib/libCalc.la
libtool: install: /usr/bin/install -c .libs/libCalc.a /home/AstroSoft/DiFX2.4.1/lib/libCalc.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libCalc.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libCalc.a
libtool: install: warning: remember to run `libtool --finish /opt/DiFX-2.4/lib'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/calc9.1'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/calc9.1'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c CalcServer checkCalcServer '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: warning: `../calc9.1/libCalc.la' has not been installed in `/opt/DiFX-2.4/lib'
libtool: install: /usr/bin/install -c .libs/CalcServer /home/AstroSoft/DiFX2.4.1/bin/CalcServer
libtool: install: /usr/bin/install -c checkCalcServer /home/AstroSoft/DiFX2.4.1/bin/checkCalcServer
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/src'
Making install in data
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/data'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/data'
make[2]: Nothing to be done for `install-exec-am'.
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/share/CalcServer'
 /usr/bin/install -c -m 644 Horizons.lis JPLEPH '/home/AstroSoft/DiFX2.4.1/share/CalcServer'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/data'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver/data'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c startCalcServer '/home/AstroSoft/DiFX2.4.1/bin'
make  install-exec-hook
make[3]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
cat ./postinstall




Note: As root you may wish to do the following:

#   cp init.d/calcserver  /etc/init.d

and then perform the steps necessary on your computer to have this file
run upon boot.  This will cause calcserver to start automatically.




make[3]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcserver'


************************************
Building  calcif2

checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking whether build environment is sane... yes
checking for erf in -lm... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for DIFXIO... yes
checking for GSL... no
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating utils/Makefile
config.status: creating config.h
config.status: executing depfiles commands
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/missing autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/sh ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/src'
gcc -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include    -MT calcif2.o -MD -MP -MF .deps/calcif2.Tpo -c -o calcif2.o calcif2.c
mv -f .deps/calcif2.Tpo .deps/calcif2.Po
gcc -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include    -MT difxcalc.o -MD -MP -MF .deps/difxcalc.Tpo -c -o difxcalc.o difxcalc.c
mv -f .deps/difxcalc.Tpo .deps/difxcalc.Po
gcc -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include    -MT externaldelay.o -MD -MP -MF .deps/externaldelay.Tpo -c -o externaldelay.o externaldelay.c
mv -f .deps/externaldelay.Tpo .deps/externaldelay.Po
gcc -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include    -MT CALC_xdr.o -MD -MP -MF .deps/CALC_xdr.Tpo -c -o CALC_xdr.o CALC_xdr.c
mv -f .deps/CALC_xdr.Tpo .deps/CALC_xdr.Po
gcc -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include    -MT poly.o -MD -MP -MF .deps/poly.Tpo -c -o poly.o poly.c
mv -f .deps/poly.Tpo .deps/poly.Po
gcc  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -o calcif2 calcif2.o difxcalc.o externaldelay.o CALC_xdr.o poly.o  -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/src'
Making all in utils
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
gcc -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include    -MT calc2skd.o -MD -MP -MF .deps/calc2skd.Tpo -c -o calc2skd.o calc2skd.c
mv -f .deps/calc2skd.Tpo .deps/calc2skd.Po
gcc  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -o calc2skd calc2skd.o  -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c calcif2 '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/src'
Making install in utils
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c calc2skd '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c jobdisks genmachines.py joblist jobstatus difxsniff listmodules listcpus startdifx vlog '/home/AstroSoft/DiFX2.4.1/bin'
make  install-exec-hook
make[3]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
mv /home/AstroSoft/DiFX2.4.1/bin/genmachines.py /home/AstroSoft/DiFX2.4.1/bin/genmachines
make[3]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2/utils'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/calcif2'


************************************
Building  difx2fits

checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking whether build environment is sane... yes
checking for erf in -lm... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for DIFXIO... yes
checking whether to enable fftw (default yes)... yes
checking for FFTW3... yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating utils/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/src'
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT difx2fits.o -MD -MP -MF .deps/difx2fits.Tpo -c -o difx2fits.o difx2fits.c
difx2fits.c: In function ‘convertFits’:
difx2fits.c:977:2: warning: #warning "FIXME: multi-setup input would overwrite previously generated FITS, make tidier fix than a rename" [-Wcpp]
 #warning "FIXME: multi-setup input would overwrite previously generated FITS, make tidier fix than a rename"
  ^
mv -f .deps/difx2fits.Tpo .deps/difx2fits.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fits.o -MD -MP -MF .deps/fits.Tpo -c -o fits.o fits.c
mv -f .deps/fits.Tpo .deps/fits.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsHeader.o -MD -MP -MF .deps/fitsHeader.Tpo -c -o fitsHeader.o fitsHeader.c
mv -f .deps/fitsHeader.Tpo .deps/fitsHeader.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsAG.o -MD -MP -MF .deps/fitsAG.Tpo -c -o fitsAG.o fitsAG.c
mv -f .deps/fitsAG.Tpo .deps/fitsAG.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsAN.o -MD -MP -MF .deps/fitsAN.Tpo -c -o fitsAN.o fitsAN.c
mv -f .deps/fitsAN.Tpo .deps/fitsAN.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsCT.o -MD -MP -MF .deps/fitsCT.Tpo -c -o fitsCT.o fitsCT.c
mv -f .deps/fitsCT.Tpo .deps/fitsCT.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsFL.o -MD -MP -MF .deps/fitsFL.Tpo -c -o fitsFL.o fitsFL.c
fitsFL.c: In function ‘processFlagFile’:
fitsFL.c:126:2: warning: #warning "FIXME: only one configId supported here" [-Wcpp]
 #warning "FIXME: only one configId supported here"
  ^
fitsFL.c: In function ‘DifxInput2FitsFL’:
fitsFL.c:311:2: warning: #warning "FIXME: only one configId supported here" [-Wcpp]
 #warning "FIXME: only one configId supported here"
  ^
mv -f .deps/fitsFL.Tpo .deps/fitsFL.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsFR.o -MD -MP -MF .deps/fitsFR.Tpo -c -o fitsFR.o fitsFR.c
mv -f .deps/fitsFR.Tpo .deps/fitsFR.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsGD.o -MD -MP -MF .deps/fitsGD.Tpo -c -o fitsGD.o fitsGD.c
mv -f .deps/fitsGD.Tpo .deps/fitsGD.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsGM.o -MD -MP -MF .deps/fitsGM.Tpo -c -o fitsGM.o fitsGM.c
mv -f .deps/fitsGM.Tpo .deps/fitsGM.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsGN.o -MD -MP -MF .deps/fitsGN.Tpo -c -o fitsGN.o fitsGN.c
mv -f .deps/fitsGN.Tpo .deps/fitsGN.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsMC.o -MD -MP -MF .deps/fitsMC.Tpo -c -o fitsMC.o fitsMC.c
fitsMC.c: In function ‘DifxInput2FitsMC’:
fitsMC.c:134:2: warning: #warning "populate the new keyword below" [-Wcpp]
 #warning "populate the new keyword below"
  ^
mv -f .deps/fitsMC.Tpo .deps/fitsMC.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsML.o -MD -MP -MF .deps/fitsML.Tpo -c -o fitsML.o fitsML.c
mv -f .deps/fitsML.Tpo .deps/fitsML.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsPH.o -MD -MP -MF .deps/fitsPH.Tpo -c -o fitsPH.o fitsPH.c
fitsPH.c:40:2: warning: #warning "FIXME: even this could be too small!" [-Wcpp]
 #warning "FIXME: even this could be too small!"
  ^
fitsPH.c:47:2: warning: #warning "FIXME: the generation of this FITS table is quite broken with regard to multiple datastreams per antenna." [-Wcpp]
 #warning "FIXME: the generation of this FITS table is quite broken with regard to multiple datastreams per antenna."
  ^
mv -f .deps/fitsPH.Tpo .deps/fitsPH.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsSO.o -MD -MP -MF .deps/fitsSO.Tpo -c -o fitsSO.o fitsSO.c
mv -f .deps/fitsSO.Tpo .deps/fitsSO.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsSU.o -MD -MP -MF .deps/fitsSU.Tpo -c -o fitsSU.o fitsSU.c
fitsSU.c:35:2: warning: #warning "FIXME: implement RAOBS and DECOBS columns" [-Wcpp]
 #warning "FIXME: implement RAOBS and DECOBS columns"
  ^
mv -f .deps/fitsSU.Tpo .deps/fitsSU.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsTS.o -MD -MP -MF .deps/fitsTS.Tpo -c -o fitsTS.o fitsTS.c
mv -f .deps/fitsTS.Tpo .deps/fitsTS.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsUV.o -MD -MP -MF .deps/fitsUV.Tpo -c -o fitsUV.o fitsUV.c
fitsUV.c: In function ‘DifxVisInitData’:
fitsUV.c:87:2: warning: #warning "FIXME: here add a similar thing for gateId?" [-Wcpp]
 #warning "FIXME: here add a similar thing for gateId?"
  ^
fitsUV.c: In function ‘DifxVisNewUVData’:
fitsUV.c:624:2: warning: #warning "FIXME: look at sourceId in the record as a check" [-Wcpp]
 #warning "FIXME: look at sourceId in the record as a check"
  ^
fitsUV.c:625:2: warning: #warning "FIXME: look at configId in the record as a check" [-Wcpp]
 #warning "FIXME: look at configId in the record as a check"
  ^
mv -f .deps/fitsUV.Tpo .deps/fitsUV.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fitsWR.o -MD -MP -MF .deps/fitsWR.Tpo -c -o fitsWR.o fitsWR.c
mv -f .deps/fitsWR.Tpo .deps/fitsWR.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT mjd2str.o -MD -MP -MF .deps/mjd2str.Tpo -c -o mjd2str.o mjd2str.c
mv -f .deps/mjd2str.Tpo .deps/mjd2str.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT time2str.o -MD -MP -MF .deps/time2str.Tpo -c -o time2str.o time2str.c
mv -f .deps/time2str.Tpo .deps/time2str.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT jobmatrix.o -MD -MP -MF .deps/jobmatrix.Tpo -c -o jobmatrix.o jobmatrix.c
mv -f .deps/jobmatrix.Tpo .deps/jobmatrix.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o util.c
mv -f .deps/util.Tpo .deps/util.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT sniffer.o -MD -MP -MF .deps/sniffer.Tpo -c -o sniffer.o sniffer.c
sniffer.c: In function ‘newSniffer’:
sniffer.c:362:2: warning: #warning "FIXME: I think almost twice as much memory is being allocated as is needed -WFB" [-Wcpp]
 #warning "FIXME: I think almost twice as much memory is being allocated as is needed -WFB"
  ^
mv -f .deps/sniffer.Tpo .deps/sniffer.Po
gcc  -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include        -o difx2fits difx2fits.o fits.o fitsHeader.o fitsAG.o fitsAN.o fitsCT.o fitsFL.o fitsFR.o fitsGD.o fitsGM.o fitsGN.o fitsMC.o fitsML.o fitsPH.o fitsSO.o fitsSU.o fitsTS.o fitsUV.o fitsWR.o mjd2str.o time2str.o textutils.o ymd2mjd.o jobmatrix.o util.o sniffer.o  -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   -lfftw3 -lm  
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/src'
Making all in utils
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/utils'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c difx2fits '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/src'
Making install in utils
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/utils'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/utils'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c makefits plotpcal showcal '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/utils'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits/utils'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2fits'


************************************
Building  vex2difx

libtoolize: putting auxiliary files in `.'.
libtoolize: copying file `./ltmain.sh'
libtoolize: Consider adding `AC_CONFIG_MACRO_DIR([m4])' to configure.ac and
libtoolize: rerunning libtoolize, to keep the correct libtool macros in-tree.
libtoolize: Consider adding `-I m4' to ACLOCAL_AMFLAGS in Makefile.am.
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking for g77... no
checking for xlf... no
checking for f77... no
checking for frt... no
checking for pgf77... no
checking for cf77... no
checking for fort77... no
checking for fl32... no
checking for af77... no
checking for xlf90... no
checking for f90... no
checking for pgf90... no
checking for pghpf... no
checking for epcf90... no
checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking how to run the C preprocessor... gcc -E
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-unknown-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... @
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm -B output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fPIC -DPIC
checking if gcc PIC flag -fPIC -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for gfortran option to produce PIC... -fPIC
checking if gfortran PIC flag -fPIC works... yes
checking if gfortran static flag -static works... no
checking if gfortran supports -c -o file.o... yes
checking if gfortran supports -c -o file.o... (cached) yes
checking whether the gfortran linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking whether build environment is sane... yes
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/bin/ld -m elf_x86_64
checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for g++ option to produce PIC... -fPIC -DPIC
checking if g++ PIC flag -fPIC -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether build environment is sane... yes
checking for erf in -lm... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for DIFXIO... yes
checking for DIFXMESSAGE... yes
checking for GPSTK... no
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating vex/Makefile
config.status: creating vex/vex.pc
config.status: creating src/Makefile
config.status: creating utilities/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
Making all in vex
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
make  all-am
make[3]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT print_vex.lo -MD -MP -MF .deps/print_vex.Tpo -c -o print_vex.lo print_vex.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT print_vex.lo -MD -MP -MF .deps/print_vex.Tpo -c print_vex.c  -fPIC -DPIC -o .libs/print_vex.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT print_vex.lo -MD -MP -MF .deps/print_vex.Tpo -c print_vex.c -o print_vex.o >/dev/null 2>&1
mv -f .deps/print_vex.Tpo .deps/print_vex.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vexf.lo -MD -MP -MF .deps/vexf.Tpo -c -o vexf.lo vexf.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vexf.lo -MD -MP -MF .deps/vexf.Tpo -c vexf.c  -fPIC -DPIC -o .libs/vexf.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vexf.lo -MD -MP -MF .deps/vexf.Tpo -c vexf.c -o vexf.o >/dev/null 2>&1
mv -f .deps/vexf.Tpo .deps/vexf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vexf_put.lo -MD -MP -MF .deps/vexf_put.Tpo -c -o vexf_put.lo vexf_put.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vexf_put.lo -MD -MP -MF .deps/vexf_put.Tpo -c vexf_put.c  -fPIC -DPIC -o .libs/vexf_put.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vexf_put.lo -MD -MP -MF .deps/vexf_put.Tpo -c vexf_put.c -o vexf_put.o >/dev/null 2>&1
mv -f .deps/vexf_put.Tpo .deps/vexf_put.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vex_get.lo -MD -MP -MF .deps/vex_get.Tpo -c -o vex_get.lo vex_get.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_get.lo -MD -MP -MF .deps/vex_get.Tpo -c vex_get.c  -fPIC -DPIC -o .libs/vex_get.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_get.lo -MD -MP -MF .deps/vex_get.Tpo -c vex_get.c -o vex_get.o >/dev/null 2>&1
mv -f .deps/vex_get.Tpo .deps/vex_get.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vex_put.lo -MD -MP -MF .deps/vex_put.Tpo -c -o vex_put.lo vex_put.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_put.lo -MD -MP -MF .deps/vex_put.Tpo -c vex_put.c  -fPIC -DPIC -o .libs/vex_put.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_put.lo -MD -MP -MF .deps/vex_put.Tpo -c vex_put.c -o vex_put.o >/dev/null 2>&1
mv -f .deps/vex_put.Tpo .deps/vex_put.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vex_util.lo -MD -MP -MF .deps/vex_util.Tpo -c -o vex_util.lo vex_util.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_util.lo -MD -MP -MF .deps/vex_util.Tpo -c vex_util.c  -fPIC -DPIC -o .libs/vex_util.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_util.lo -MD -MP -MF .deps/vex_util.Tpo -c vex_util.c -o vex_util.o >/dev/null 2>&1
mv -f .deps/vex_util.Tpo .deps/vex_util.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vex_parse.lo -MD -MP -MF .deps/vex_parse.Tpo -c -o vex_parse.lo vex_parse.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_parse.lo -MD -MP -MF .deps/vex_parse.Tpo -c vex_parse.c  -fPIC -DPIC -o .libs/vex_parse.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex_parse.lo -MD -MP -MF .deps/vex_parse.Tpo -c vex_parse.c -o vex_parse.o >/dev/null 2>&1
mv -f .deps/vex_parse.Tpo .deps/vex_parse.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile gcc -DHAVE_CONFIG_H -I. -I..  -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex   -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vex.yy.lo -MD -MP -MF .deps/vex.yy.Tpo -c -o vex.yy.lo vex.yy.c
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex.yy.lo -MD -MP -MF .deps/vex.yy.Tpo -c vex.yy.c  -fPIC -DPIC -o .libs/vex.yy.o
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I.. -Dyyerror=vexerror -Dyylval=vexlval -Dyyin=vexin -Dyyparse=vexparse -Dyylex=vexlex -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -MT vex.yy.lo -MD -MP -MF .deps/vex.yy.Tpo -c vex.yy.c -o vex.yy.o >/dev/null 2>&1
mv -f .deps/vex.yy.Tpo .deps/vex.yy.Plo
/bin/sh ../libtool  --tag=CC   --mode=link gcc  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -o libvex.la -rpath /home/AstroSoft/DiFX2.4.1/lib print_vex.lo vexf.lo vexf_put.lo vex_get.lo vex_put.lo vex_util.lo vex_parse.lo vex.yy.lo  -lfl -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   
libtool: link: rm -fr  .libs/libvex.a .libs/libvex.la .libs/libvex.lai .libs/libvex.so .libs/libvex.so.0 .libs/libvex.so.0.0.0
libtool: link: gcc -shared  -fPIC -DPIC  .libs/print_vex.o .libs/vexf.o .libs/vexf_put.o .libs/vex_get.o .libs/vex_put.o .libs/vex_util.o .libs/vex_parse.o .libs/vex.yy.o   -Wl,-rpath -Wl,/home/AstroSoft/DiFX2.4.1/lib -Wl,-rpath -Wl,/home/AstroSoft/DiFX2.4.1/lib -lfl -L/home/AstroSoft/DiFX2.4.1/lib /home/AstroSoft/DiFX2.4.1/lib/libdifxio.so -lfftw3 -lm  -O2   -Wl,-soname -Wl,libvex.so.0 -o .libs/libvex.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libvex.so.0" && ln -s "libvex.so.0.0.0" "libvex.so.0")
libtool: link: (cd ".libs" && rm -f "libvex.so" && ln -s "libvex.so.0.0.0" "libvex.so")
libtool: link: ar cru .libs/libvex.a  print_vex.o vexf.o vexf_put.o vex_get.o vex_put.o vex_util.o vex_parse.o vex.yy.o
libtool: link: ranlib .libs/libvex.a
libtool: link: ( cd ".libs" && rm -f "libvex.la" && ln -s "../libvex.la" "libvex.la" )
make[3]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/src'
g++ -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vextables.o -MD -MP -MF .deps/vextables.Tpo -c -o vextables.o vextables.cpp
mv -f .deps/vextables.Tpo .deps/vextables.Po
g++ -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vexload.o -MD -MP -MF .deps/vexload.Tpo -c -o vexload.o vexload.cpp
vexload.cpp:439:2: warning: #warning : "FIXME: note: the following should eventually be removed once proper linking in vex files is in place" [-Wcpp]
 #warning: "FIXME: note: the following should eventually be removed once proper linking in vex files is in place"
  ^
vexload.cpp:1243:2: warning: #warning "handling of INTERLACEDVDIF nRecordChan may not be correct in all cases" [-Wcpp]
 #warning "handling of INTERLACEDVDIF nRecordChan may not be correct in all cases"
  ^
mv -f .deps/vexload.Tpo .deps/vexload.Po
g++ -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT corrparams.o -MD -MP -MF .deps/corrparams.Tpo -c -o corrparams.o corrparams.cpp
corrparams.cpp:611:2: warning: #warning "FIXME: this assumes worst case bandwidth here" [-Wcpp]
 #warning "FIXME: this assumes worst case bandwidth here"
  ^
corrparams.cpp:1234:2: warning: #warning "FIXME: this section of code could be made much nicer" [-Wcpp]
 #warning "FIXME: this section of code could be made much nicer"
  ^
corrparams.cpp:2436:2: warning: #warning "FIXME: This logic should consider number of antennas and possibly number of sub-bands" [-Wcpp]
 #warning "FIXME: This logic should consider number of antennas and possibly number of sub-bands"
  ^
mv -f .deps/corrparams.Tpo .deps/corrparams.Po
g++ -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT util.o -MD -MP -MF .deps/util.Tpo -c -o util.o util.cpp
mv -f .deps/util.Tpo .deps/util.Po
g++ -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vex2difx.o -MD -MP -MF .deps/vex2difx.Tpo -c -o vex2difx.o vex2difx.cpp
vex2difx.cpp:90:2: warning: #warning "FIXME: handle non 2^n overSamp here" [-Wcpp]
 #warning "FIXME: handle non 2^n overSamp here"
  ^
vex2difx.cpp:211:2: warning: #warning "FIXME: verify modes are compatible" [-Wcpp]
 #warning "FIXME: verify modes are compatible"
  ^
vex2difx.cpp:1246:2: warning: #warning "FIXME: populateBaselineTable assumes nAntenna == nDatastream!" [-Wcpp]
 #warning "FIXME: populateBaselineTable assumes nAntenna == nDatastream!"
  ^
vex2difx.cpp:1986:2: warning: #warning "FIXME: is setting pulsarId = -1 correct" [-Wcpp]
 #warning "FIXME: is setting pulsarId = -1 correct"
  ^
vex2difx.cpp:2276:2: warning: #warning "FIXME: There might be something fishy in the source name comparison above." [-Wcpp]
 #warning "FIXME: There might be something fishy in the source name comparison above."
  ^
vex2difx.cpp:3065:2: warning: #warning "FIXME: ultimately move this to writeDifxInput()" [-Wcpp]
 #warning "FIXME: ultimately move this to writeDifxInput()"
  ^
vex2difx.cpp:3283:2: warning: #warning "FIXME: check phase center names for legality" [-Wcpp]
 #warning "FIXME: check phase center names for legality"
  ^
mv -f .deps/vex2difx.Tpo .deps/vex2difx.Po
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -o vex2difx vextables.o vexload.o corrparams.o util.o vex2difx.o ../vex/libvex.la -lfl -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   
libtool: link: g++ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -o .libs/vex2difx vextables.o vexload.o corrparams.o util.o vex2difx.o  ../vex/.libs/libvex.so -L/home/AstroSoft/DiFX2.4.1/lib -lfl /home/AstroSoft/DiFX2.4.1/lib/libdifxio.so -lfftw3 -lm -Wl,-rpath -Wl,/home/AstroSoft/DiFX2.4.1/lib
g++ -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include    -MT vexpeek.o -MD -MP -MF .deps/vexpeek.Tpo -c -o vexpeek.o vexpeek.cpp
mv -f .deps/vexpeek.Tpo .deps/vexpeek.Po
/bin/sh ../libtool  --tag=CXX   --mode=link g++  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include      -o vexpeek vexpeek.o vextables.o vexload.o corrparams.o ../vex/libvex.la -lfl -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   
libtool: link: g++ -g -O2 -I/home/AstroSoft/DiFX2.4.1/include -I/home/AstroSoft/DiFX2.4.1/include -o .libs/vexpeek vexpeek.o vextables.o vexload.o corrparams.o  ../vex/.libs/libvex.so -L/home/AstroSoft/DiFX2.4.1/lib -lfl /home/AstroSoft/DiFX2.4.1/lib/libdifxio.so -lfftw3 -lm -Wl,-rpath -Wl,/home/AstroSoft/DiFX2.4.1/lib
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/src'
Making all in utilities
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/utilities'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/utilities'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
Making install in vex
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
make  install-am
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
make[3]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib'
 /bin/sh ../libtool   --mode=install /usr/bin/install -c   libvex.la '/home/AstroSoft/DiFX2.4.1/lib'
libtool: install: /usr/bin/install -c .libs/libvex.so.0.0.0 /home/AstroSoft/DiFX2.4.1/lib/libvex.so.0.0.0
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libvex.so.0.0.0 libvex.so.0 || { rm -f libvex.so.0 && ln -s libvex.so.0.0.0 libvex.so.0; }; })
libtool: install: (cd /home/AstroSoft/DiFX2.4.1/lib && { ln -s -f libvex.so.0.0.0 libvex.so || { rm -f libvex.so && ln -s libvex.so.0.0.0 libvex.so; }; })
libtool: install: /usr/bin/install -c .libs/libvex.lai /home/AstroSoft/DiFX2.4.1/lib/libvex.la
libtool: install: /usr/bin/install -c .libs/libvex.a /home/AstroSoft/DiFX2.4.1/lib/libvex.a
libtool: install: chmod 644 /home/AstroSoft/DiFX2.4.1/lib/libvex.a
libtool: install: ranlib /home/AstroSoft/DiFX2.4.1/lib/libvex.a
libtool: finish: PATH="/home/AstroSoft/DiFX2.4.1/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:/opt/casa/casa-release-4.7.0-1-el7/bin:/sbin" ldconfig -n /home/AstroSoft/DiFX2.4.1/lib
----------------------------------------------------------------------
Libraries have been installed in:
   /home/AstroSoft/DiFX2.4.1/lib

If you ever happen to want to link against installed libraries
in a given directory, LIBDIR, you must either use libtool, and
specify the full pathname of the library, or use the `-LLIBDIR'
flag during linking and do at least one of the following:
   - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
     during execution
   - add LIBDIR to the `LD_RUN_PATH' environment variable
     during linking
   - use the `-Wl,-rpath -Wl,LIBDIR' linker flag
   - have your system administrator add LIBDIR to `/etc/ld.so.conf'

See any operating system documentation about shared libraries for
more information, such as the ld(1) and ld.so(8) manual pages.
----------------------------------------------------------------------
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/install -c -m 644 vex_parse.h vex.h '/home/AstroSoft/DiFX2.4.1/include'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
 /usr/bin/install -c -m 644 vex.pc '/home/AstroSoft/DiFX2.4.1/lib/pkgconfig'
make[3]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/vex'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /bin/sh ../libtool   --mode=install /usr/bin/install -c vex2difx vexpeek '/home/AstroSoft/DiFX2.4.1/bin'
libtool: install: /usr/bin/install -c .libs/vex2difx /home/AstroSoft/DiFX2.4.1/bin/vex2difx
libtool: install: /usr/bin/install -c .libs/vexpeek /home/AstroSoft/DiFX2.4.1/bin/vexpeek
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/src'
Making install in utilities
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/utilities'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/utilities'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c padCalcScans difxspeed oms2v2d calc2xyz calc2sked '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/utilities'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx/utilities'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/vex2difx'


************************************
Building  difx2mark4

checking for gcc... gcc
checking whether the C compiler works...
yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking whether byte ordering is bigendian... no
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking dependency style of gcc... gcc3
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking for gawk... (cached) gawk
checking whether build environment is sane... yes
checking for erf in -lm... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for DIFXIO... yes
checking whether to enable fftw (default yes)... yes
checking for FFTW3... yes
checking that generated files are newer than configure... done
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4/src'
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT difx2mark4.o -MD -MP -MF .deps/difx2mark4.Tpo -c -o difx2mark4.o difx2mark4.c
mv -f .deps/difx2mark4.Tpo .deps/difx2mark4.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT createRoot.o -MD -MP -MF .deps/createRoot.Tpo -c -o createRoot.o createRoot.c
mv -f .deps/createRoot.Tpo .deps/createRoot.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT createType1s.o -MD -MP -MF .deps/createType1s.Tpo -c -o createType1s.o createType1s.c
mv -f .deps/createType1s.Tpo .deps/createType1s.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT new_type1.o -MD -MP -MF .deps/new_type1.Tpo -c -o new_type1.o new_type1.c
mv -f .deps/new_type1.Tpo .deps/new_type1.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT createType3s.o -MD -MP -MF .deps/createType3s.Tpo -c -o createType3s.o createType3s.c
mv -f .deps/createType3s.Tpo .deps/createType3s.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT root_id.o -MD -MP -MF .deps/root_id.Tpo -c -o root_id.o root_id.c
mv -f .deps/root_id.Tpo .deps/root_id.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT single_code.o -MD -MP -MF .deps/single_code.Tpo -c -o single_code.o single_code.c
mv -f .deps/single_code.Tpo .deps/single_code.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT conv2date.o -MD -MP -MF .deps/conv2date.Tpo -c -o conv2date.o conv2date.c
mv -f .deps/conv2date.Tpo .deps/conv2date.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT get_vis.o -MD -MP -MF .deps/get_vis.Tpo -c -o get_vis.o get_vis.c
mv -f .deps/get_vis.Tpo .deps/get_vis.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT swabr.o -MD -MP -MF .deps/swabr.Tpo -c -o swabr.o swabr.c
mv -f .deps/swabr.Tpo .deps/swabr.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t100.o -MD -MP -MF .deps/write_t100.Tpo -c -o write_t100.o write_t100.c
mv -f .deps/write_t100.Tpo .deps/write_t100.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t101.o -MD -MP -MF .deps/write_t101.Tpo -c -o write_t101.o write_t101.c
mv -f .deps/write_t101.Tpo .deps/write_t101.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t120.o -MD -MP -MF .deps/write_t120.Tpo -c -o write_t120.o write_t120.c
mv -f .deps/write_t120.Tpo .deps/write_t120.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t300.o -MD -MP -MF .deps/write_t300.Tpo -c -o write_t300.o write_t300.c
mv -f .deps/write_t300.Tpo .deps/write_t300.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t301.o -MD -MP -MF .deps/write_t301.Tpo -c -o write_t301.o write_t301.c
mv -f .deps/write_t301.Tpo .deps/write_t301.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t302.o -MD -MP -MF .deps/write_t302.Tpo -c -o write_t302.o write_t302.c
mv -f .deps/write_t302.Tpo .deps/write_t302.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t303.o -MD -MP -MF .deps/write_t303.Tpo -c -o write_t303.o write_t303.c
mv -f .deps/write_t303.Tpo .deps/write_t303.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT write_t309.o -MD -MP -MF .deps/write_t309.Tpo -c -o write_t309.o write_t309.c
mv -f .deps/write_t309.Tpo .deps/write_t309.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT other.o -MD -MP -MF .deps/other.Tpo -c -o other.o other.c
mv -f .deps/other.Tpo .deps/other.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT normalize.o -MD -MP -MF .deps/normalize.Tpo -c -o normalize.o normalize.c
mv -f .deps/normalize.Tpo .deps/normalize.Po
gcc -DHAVE_CONFIG_H -I. -I..     -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include      -MT fill_fblock.o -MD -MP -MF .deps/fill_fblock.Tpo -c -o fill_fblock.o fill_fblock.c
mv -f .deps/fill_fblock.Tpo .deps/fill_fblock.Po
gcc  -D_LARGE_FILE_SOURCE -D_GNU_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -I/home/AstroSoft/DiFX2.4.1/include        -o difx2mark4 difx2mark4.o createRoot.o createType1s.o new_type1.o createType3s.o root_id.o single_code.o conv2date.o get_vis.o swabr.o write_t100.o write_t101.o write_t120.o write_t300.o write_t301.o write_t302.o write_t303.o write_t309.o other.o normalize.o fill_fblock.o  -lm  -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   -lfftw3 -lm  
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c difx2mark4 '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4/src'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/applications/difx2mark4'


************************************
Building  pulsar/difx2profile
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether /home/AstroSoft/mpich/bin/mpicxx accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of /home/AstroSoft/mpich/bin/mpicxx... gcc3
checking for ranlib... ranlib
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for DIFXIO... yes
checking for FXCORR... yes
checking for DIFXMESSAGE... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating scripts/Makefile
config.status: creating config.h
config.status: executing depfiles commands
(CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/sh /home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/missing autoheader)
rm -f stamp-h1
touch config.h.in
cd . && /bin/sh ./config.status config.h
config.status: creating config.h
config.status: config.h is unchanged
make  all-recursive
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
Making all in src
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/src'
/home/AstroSoft/mpich/bin/mpicxx -DHAVE_CONFIG_H -I. -I..     -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/mpifxcorr -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include   -MT difx2profile.o -MD -MP -MF .deps/difx2profile.Tpo -c -o difx2profile.o difx2profile.cpp
mv -f .deps/difx2profile.Tpo .deps/difx2profile.Po
/home/AstroSoft/mpich/bin/mpicxx  -g -O2 -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/mpifxcorr -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include     -o difx2profile difx2profile.o  -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/DiFX2.4.1/lib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lfxcorr -lmark5access -lippsem64t -lguide -lippvmem64t -lippcoreem64t -lpthread   -L/home/AstroSoft/DiFX2.4.1/lib -ldifxio   -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage   -lpthread
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/src'
Making all in scripts
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/scripts'
make[2]: Nothing to be done for `all'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/scripts'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
Making install in src
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/src'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/src'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c difx2profile '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/src'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/src'
Making install in scripts
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/scripts'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/scripts'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c profile2binconfig.py '/home/AstroSoft/DiFX2.4.1/bin'
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/scripts'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile/scripts'
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/pulsar/difx2profile'


************************************
Building  misc
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
make: Nothing to be done for `all'.
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/misc'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c dir2filelist.pl geteop.pl pcList.pl fslog2difx.pl sec2time.pl difxcopy startcorr.pl time.pl time2sec.pl update_eop vex2setup.pl filterDifx2Fits.py '/home/AstroSoft/DiFX2.4.1/bin'
make  install-exec-hook
make[2]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/misc'
mv /home/AstroSoft/DiFX2.4.1/bin/filterDifx2Fits.py /home/AstroSoft/DiFX2.4.1/bin/filterDifx2Fits
make[2]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/misc'
make[1]: Nothing to be done for `install-data-am'.
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/misc'


************************************
Building  vis2screen
configure.ac:6: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated.  For more info, see:
configure.ac:6: http://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for FXCORR... yes
checking for DIFXMESSAGE... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
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configure: creating ./config.status
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config.status: executing depfiles commands
/home/AstroSoft/mpich/bin/mpicxx -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"printDiFX\" -DVERSION=\"0.5\" -I.    -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/mpifxcorr -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include     -g -O2 -MT printDiFX.o -MD -MP -MF .deps/printDiFX.Tpo -c -o printDiFX.o printDiFX.cpp
mv -f .deps/printDiFX.Tpo .deps/printDiFX.Po
/home/AstroSoft/mpich/bin/mpicxx -I/home/AstroSoft/DiFX2.4.1/include   -I/home/AstroSoft/DiFX2.4.1/include/mpifxcorr -I/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/include     -g -O2   -o printDiFX printDiFX.o -Wl,-rpath,/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -L/home/AstroSoft/DiFX2.4.1/lib -L/home/AstroSoft/intel/ipp_6/6.0.1.071/em64t/sharedlib -lfxcorr -lmark5access -lippsem64t -lguide -lippvmem64t -lippcoreem64t -lpthread   -L/home/AstroSoft/DiFX2.4.1/lib -ldifxmessage    
make[1]: Entering directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/vis2screen'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
  /usr/bin/install -c printDiFX '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/mkdir -p '/home/AstroSoft/DiFX2.4.1/bin'
 /usr/bin/install -c diffDiFX.py plotDiFX.py parseDiFX.py fringeFindDiFX.py plotDynamicSpectrum.py snipDiFX.py '/home/AstroSoft/DiFX2.4.1/bin'
make[1]: Nothing to be done for `install-data-am'.
make[1]: Leaving directory `/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/utilities/vis2screen'
cp -f /home/leo/Downloads/DiFX_Install/DiFX-2.4.1/doco-index.html /home/AstroSoft/DiFX2.4.1/doc//index.html
cp: cannot stat ‘/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/doco-index.html’: No such file or directory
/usr/bin/doxygen
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Notice: Output directory `/home/AstroSoft/DiFX2.4.1/doc/mpifxcorr/' does not exist. I have created it for you.
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mark5bfile.h:58: warning: include file vector not found, perhaps you forgot to add its directory to INCLUDE_PATH?
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mk5.h:56: warning: include file vector not found, perhaps you forgot to add its directory to INCLUDE_PATH?
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/vdiffile.h:57: warning: include file vector not found, perhaps you forgot to add its directory to INCLUDE_PATH?
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mark5bmark5.cpp:176: warning: documented symbol `void Mark5BMark5DataStream::mark5threadfunction' was not declared or defined.
/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mark5bmark5.cpp:340: warning: documented symbol `void * Mark5BMark5DataStream::launchmark5threadfunction' was not declared or defined.
/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mark5bmark5.cpp:685: warning: no uniquely matching class member found for
  int Mark5BMark5DataStream::dataRead(int buffersegment)

/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mark5bmark5.cpp:913: warning: no uniquely matching class member found for
  void Mark5BMark5DataStream::loopfileread()

/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mark5bmark5.cpp:1027: warning: documented symbol `void Mark5BMark5DataStream::servoMark5' was not declared or defined.
/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/vdifmark5.cpp:172: warning: documented symbol `void VDIFMark5DataStream::mark5threadfunction' was not declared or defined.
/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/vdifmark5.cpp:310: warning: documented symbol `void * VDIFMark5DataStream::launchmark5threadfunction' was not declared or defined.
/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/vdifmark5.cpp:659: warning: no uniquely matching class member found for
  int VDIFMark5DataStream::dataRead(int buffersegment)

/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/vdifmark5.cpp:903: warning: no uniquely matching class member found for
  void VDIFMark5DataStream::loopfileread()

/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/vdifmark5.cpp:1007: warning: documented symbol `void VDIFMark5DataStream::servoMark5' was not declared or defined.
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/mk5mode.h:36: warning: The following parameters of Mk5Mode::Mk5Mode(Configuration *conf, int confindex, int dsindex, int recordedbandchan, int chanstoavg, int bpersend, int gsamples, int nrecordedfreqs, double recordedbw, double *recordedfreqclkoffs, double *recordedfreqclkoffsdelta, double *recordedfreqphaseoffs, double *recordedfreqlooffs, int nrecordedbands, int nzoombands, int nbits, Configuration::datasampling sampling, Configuration::complextype tcomplex, bool fbank, bool linear2circular, int fringerotorder, int arraystridelen, bool cacorrs, int framebytes, int framesamples, Configuration::dataformat format) are not documented:
  parameter 'recordedfreqclkoffsdelta'
  parameter 'recordedfreqphaseoffs'
Generating docs for compound Mode...
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/pcal.cpp:252: warning: argument 'pcalout' of command @param is not found in the argument list of PCal::extractAndIntegrate_reference(f32 const *data, const size_t len, cf32 *out, const uint64_t sampleoffset)
Generating docs for compound pcal_config_pimpl...
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/home/leo/Downloads/DiFX_Install/DiFX-2.4.1/mpifxcorr/src/pcal.cpp:1248: warning: argument 'pointer' of command @param is not found in the argument list of PCalExtractorDummy::getFinalPCal(cf32 *out)
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finalizing index lists...
lookup cache used 2381/65536 hits=8086 misses=2456
finished...
Done!
'''

发表于 更新于 分类于 阅读次数： Disqus： Valine：

Python 虚拟环境 conda

更新镜像更新地址

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$ conda config --add channels https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/
$ conda config --set show_channel_urls yes

使用

Conda 是一个开源的软件包管理系统和环境管理系统，用于安装多个版本的软件包及其依赖关系，并在它们之间轻松切换。

安装可以下载一个科学计算包anaconda，怕麻烦的人可以直接安装，自带很多必须包

创建

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$ conda create --name AI python=3.7
#or
$ conda create --prefix /the/path/AI python=3.7

使用

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$ conda env list #查看当前存在的虚拟环境
$ conda activate py3 #激活虚拟环境 activate py3 windows下
# or
$ conda activate /home/share/AI
$ conda install numpy #安装包
$ source deactivate #退出虚拟环境
$ conda remove -n py3 --all #删除虚拟环境

共享环境导出和使用requirement.txt文件

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$ conda list -e > requirements.txt
$ conda install --yes --file requirements.txt

共享环境导出和使用yml文件

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$ conda env export > /path/to/environment.yaml
#其中-f表示你要导出文件在本地的路径，所以/path/to/environment.yml要换成你本地的实际路径
$ conda env update -f=/path/to/environment.yml

# 安装yml文件
$ conda env create -f environment.yaml

Troubleshooting

当电脑上安装了Python2 和 python3时，有如下错误：

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raise ImportError('This package should not be accessible on Python 3. '

ImportError: This package should not be accessible on Python 3. 

Either you are trying to run from the python-future src folder or your installation of python-future is corrupted

这大概率是因为环境变量PYTHONPATH的原因，重置该环境变量即可。

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unset PYTHONPATH

即可解决

发表于 更新于 分类于 阅读次数： Disqus： Valine：

Python的字符串操作

字符串连接

用+

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print ('hello' + 'world')

直接连接

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print ('hello'  ' world')

标准输出的重定向

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from io import StringIO
import sys
old_stdout = sys.stdout
result = StringIO()
sys.stdout = result
print('hello','world')
sys.stdout = old_stdout
result_str = result.getvalue()
print(result_str)

格式化输出

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s = '<%s> <%s>' % ('hello','world')

使用join函数

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s = " ".join(['hello','world'])
print(s)